Keto Pepperoni Zucchini Boats

Featured in: Smart Weeknight Meals

This easy-to-make dish features halved zucchinis hollowed out and brushed with olive oil. They're filled with sugar-free tomato sauce seasoned with Italian herbs, layered with plenty of shredded mozzarella, and topped with savory pepperoni slices. Baked until tender and golden, these boats offer a flavorful, low-carb meal combining fresh vegetables and classic Italian-American flavors, perfect for quick weeknight dinners or satisfying keto plans.

Updated on Fri, 13 Feb 2026 15:46:00 GMT
Keto Pepperoni Zucchini Pizza Boats with Mozzarella Melt: tender zucchini halves loaded with zesty tomato sauce, melty mozzarella, and crispy pepperoni slices. Pin it
Keto Pepperoni Zucchini Pizza Boats with Mozzarella Melt: tender zucchini halves loaded with zesty tomato sauce, melty mozzarella, and crispy pepperoni slices. | fungeniusrecipe.com

My kitchen smelled like a pizzeria the afternoon I first made these zucchini boats, except there wasn't a carb in sight. I'd been scrolling through keto recipes at my desk, feeling that familiar frustration of missing pizza nights, when it hit me that zucchini halves could hold all the toppings I actually craved. Twenty minutes later, golden cheese bubbling under the broiler, I realized I wasn't compromising on flavor at all. This dish became my answer to the question I kept asking: why does eating differently have to mean eating boring?

I made these for my sister on a random Tuesday when she was skeptical about keto, convinced she'd never enjoy a meal without bread. Watching her take that first bite, melted mozzarella stringing from the zucchini, something shifted in her expression. She ate three boats and asked if I could teach her how to make them. That's when I knew this wasn't just a workaround recipe, it was genuinely delicious in its own right.

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Ingredients

  • Zucchinis (4 medium): Choose firm ones roughly the same size so they cook evenly; if they're too large, the walls get mushy before the cheese melts.
  • Olive oil (1 tablespoon): This keeps the zucchini from sticking and adds a subtle richness that prevents the boats from tasting watery.
  • Sugar-free tomato or pizza sauce (1/2 cup): Read labels carefully since some brands sneak in carbs; I've found the ones labeled for marinara tend to be cleaner than generic pizza sauce.
  • Dried Italian herbs (1 teaspoon): This small amount matters more than you'd think, adding depth without overpowering the fresh cheese flavors.
  • Shredded mozzarella cheese (1 cup): Pre-shredded works, but freshly shredded melts more smoothly and creates that golden bubbly texture everyone loves.
  • Pepperoni slices (24): Look for varieties without dextrose or added sugars; the quality of your pepperoni determines whether this tastes indulgent or just adequate.
  • Grated Parmesan cheese (1/4 cup): The hard cheese adds a salty punch that brings everything together at the very end.
  • Fresh basil (2 tablespoons, optional): If you have it, the brightness transforms these from a satisfying meal into something that feels restaurant-quality.

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Instructions

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Get your oven ready and prep your workspace:
Preheat to 400°F and line a baking sheet with parchment paper. This temperature gets the cheese bubbly without overcooking the zucchini flesh underneath.
Prepare the zucchini boats:
Wash each zucchini and slice lengthwise, then use a spoon to gently scoop out the seedy center, leaving walls about 1/4-inch thick. If you dig too deep, your boats fall apart; too shallow and they stay watery inside.
Season and arrange:
Brush the cut sides with olive oil and sprinkle salt and pepper generously. Stand them cut-side up on your prepared sheet, making sure they're not crowded so heat circulates properly.
Build the boats:
Spoon about 2 tablespoons of tomato sauce into each half, then sprinkle Italian herbs over the sauce. This layering means every bite has seasoning throughout, not just on top.
Add the cheese and toppings:
Layer mozzarella first, then arrange 3 pepperoni slices per boat (or more if you want), and finish with a pinch of Parmesan. The mozzarella underneath holds everything together while it cooks.
Bake until golden:
Slide into the oven for 18-20 minutes, watching until the cheese is bubbly and slightly browned at the edges. The zucchini should be fork-tender but still holding its shape.
Finish and serve:
Remove from heat, add fresh basil if you have it, and let cool just a minute before serving. These are best warm but not piping hot, when all the textures are at their best.
Keto Pepperoni Zucchini Pizza Boats with Mozzarella Melt: low-carb zucchini boats baked until golden, topped with savory pepperoni and bubbling mozzarella cheese. Pin it
Keto Pepperoni Zucchini Pizza Boats with Mozzarella Melt: low-carb zucchini boats baked until golden, topped with savory pepperoni and bubbling mozzarella cheese. | fungeniusrecipe.com

One evening, while reheating leftovers, my partner grabbed one of these boats straight from the cold fridge and bit into it, undeterred. I expected disappointment, but he shrugged and said it was surprisingly good cold too, like a zucchini pizza sandwich. That moment made me realize this recipe works across situations, not just when freshly made, which somehow made it feel more real and useful than most things I cook.

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Why This Works Better Than You'd Expect

The secret lives in how zucchini behaves when roasted. Most vegetables lose their structure under high heat, but zucchini actually firms up slightly while staying tender enough to eat easily. The moisture escapes as steam, concentrating any flavor rather than diluting it. Pair that with melting cheese and seasoned toppings, and you've accidentally created something that tastes like pizza without any of the bloat that usually follows. The fact that it's low-carb becomes almost irrelevant once you taste it.

Variations Worth Exploring

While the classic pepperoni version is my default, I've learned that these boats are genuinely flexible. Sautéed mushrooms add an earthy richness that makes it feel like you're eating something fancy. Diced bell peppers bring brightness without adding significant carbs. Even leftover rotisserie chicken shredded and layered in works beautifully. The trick is not overloading them; a crowded boat steams rather than roasts, so restraint matters more than abundance.

Serving and Storage Tips

These pair perfectly with a sharp green salad dressed in lemon vinaigrette, which cuts through the richness of the cheese beautifully. They're equally good as a quick lunch the next day, either cold or warmed briefly in a toaster oven. I usually make a double batch because leftovers disappear faster than I expect, and they hold well in the refrigerator for three or four days.

  • Store covered in the fridge and reheat gently to preserve the texture of the cheese and zucchini.
  • Double the recipe if you're feeding a crowd; people always eat more of these than they anticipate.
  • Assemble them ahead of time and refrigerate unbaked, then bake when you're ready to eat for maximum flexibility.
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Keto Pepperoni Zucchini Pizza Boats with Mozzarella Melt: fresh zucchini stuffed with rich tomato sauce, gooey mozzarella, and spicy pepperoni for a keto-friendly pizza fix. Pin it
Keto Pepperoni Zucchini Pizza Boats with Mozzarella Melt: fresh zucchini stuffed with rich tomato sauce, gooey mozzarella, and spicy pepperoni for a keto-friendly pizza fix. | fungeniusrecipe.com

These boats turned my keto transition from a restrictive thing into something genuinely enjoyable, the kind of meal I actually want to eat instead of something I feel obligated to finish. They've proven that eating differently doesn't mean eating less interesting food, it just means learning to build flavor with the ingredients that work for your body.

Recipe FAQs

Can I use turkey or vegetarian pepperoni?

Yes, turkey or vegetarian pepperoni can be substituted to suit dietary preferences without compromising flavor.

How should I prepare the zucchinis for stuffing?

Slice zucchinis lengthwise and scoop out the center seeds carefully to create boats with about 1/4-inch thick walls for optimal filling hold.

What herbs complement the tomato sauce in this dish?

Italian herbs like oregano, basil, and thyme enhance the sauce’s flavor, providing a classic and fragrant taste.

Can I add other vegetables before baking?

Absolutely, sautéed mushrooms, chopped bell peppers, or olives can be added for extra flavor and texture.

What’s the best way to achieve melted, bubbly cheese?

Bake the filled zucchinis at 400°F (200°C) for 18–20 minutes until the cheese turns golden and bubbly.

Is this dish suitable for gluten-free diets?

Yes, all ingredients are naturally gluten-free, making it suitable for gluten-sensitive individuals.

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Keto Pepperoni Zucchini Boats

Low-carb zucchini boats stuffed with pepperoni, tomato sauce, and melted mozzarella cheese.

Prep time
15 minutes
Cook time
20 minutes
Complete time
35 minutes
Created by Fungeniusrecipe Chloe Anderson

Recipe category Smart Weeknight Meals

Skill level Easy

Cuisine type Italian-American

Portions 4 Number of servings

Dietary details Free from gluten, Low in carbs

What You Need

Vegetables

01 4 medium zucchinis
02 1 tablespoon olive oil
03 Salt and freshly ground black pepper to taste

Sauce and Toppings

01 1/2 cup sugar-free tomato or pizza sauce
02 1 teaspoon dried Italian herbs
03 1 cup shredded mozzarella cheese
04 24 slices pepperoni, sugar-free if possible
05 1/4 cup grated Parmesan cheese
06 2 tablespoons chopped fresh basil, optional for garnish

How to Make

Step 01

Prepare oven and baking sheet: Preheat oven to 400°F. Line a baking sheet with parchment paper.

Step 02

Hollow zucchini halves: Wash zucchinis and slice lengthwise. Using a spoon, carefully scoop out center seeds to create shallow boats, leaving approximately 1/4 inch thick walls.

Step 03

Season zucchini boats: Brush cut sides of zucchini boats with olive oil and sprinkle with salt and pepper.

Step 04

Arrange on baking sheet: Place zucchini boats cut side up on prepared baking sheet.

Step 05

Add tomato sauce and herbs: Spoon approximately 2 tablespoons of tomato sauce into each zucchini half and sprinkle evenly with Italian herbs.

Step 06

Layer cheese and pepperoni: Top each boat with shredded mozzarella cheese, followed by 3 pepperoni slices per boat, and finish with a sprinkle of Parmesan cheese.

Step 07

Bake until golden: Bake for 18 to 20 minutes or until zucchinis are tender and cheese is golden and bubbly.

Step 08

Finish and serve: Remove from oven, garnish with fresh basil if desired, and serve warm.

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Equipment needed

  • Baking sheet
  • Parchment paper
  • Sharp knife
  • Spoon for scooping
  • Pastry brush

Allergy details

Don’t forget to check each item for allergens. Talk to a healthcare professional if you’re unsure.
  • Contains dairy including mozzarella and Parmesan cheese.
  • Contains pork in pepperoni; substitute as needed for dietary preferences.
  • Check ingredient labels for hidden sugars or allergens in pepperoni and sauce.

Nutrition (each serving)

These nutrition facts are for reference only. Always consult an expert for medical advice.
  • Calorie count: 210
  • Fat content: 14 g
  • Carbohydrates: 6 g
  • Protein content: 16 g

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